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SRAP体系中苔藓植物遗传多样性分析中的正交优化及初步应用

《广西植物》[ISSN:1000-3142/CN:45-1134/Q]

期数:
2010年03期
页码:
343-347
栏目:
系统演化植物学与生物地理学
出版日期:
2010-05-25

文章信息/Info

Title:
Optimization of orthogonal design and initial application in genetic diversity analysis for bryophytes in SRAP system
作者:
张安世 张为民 邢智峰 刘永英 辛泽华
焦作师范高等专科学校生物系, 河南 焦作 454001
Author(s):
ZHANG An-Shi ZHANG Wei-Min XING Zhi-Feng LIU Yong-Ying XIN ZeHua
Department of Biology, Jiaozuo Teachers College, Jiaozuo 454001, China
关键词:
苔藓 SRAP 正交设计 优化 亲缘关系 遗传多样性
Keywords:
bryophytes SRAP orthogonal design optimization phylogenetic relationship genetic diversity
分类号:
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DOI:
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文献标识码:
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摘要:
以黄灰藓为材料,通过正交法优化SRAPPCR反应条件,并在此基础上对11种苔藓植物进行遗传多样性分析。结果表明:苔藓植物SRAP反应(25 μL体系)的最佳条件为:40 ng DNA模板,2.5 mmol/L Mg2+,0.3 mmol/L dNTP,15 pmol引物,1.5 U Taq酶。用30对引物组合进行筛选,有5对引物组合扩增条带清晰,重复性好,共扩增出65条带,其中多态性条带63条,多态性比率为96.9%。通过SPSS11.5分析软件对扩增结果进行聚类分析,结果与形态学分类基本一致,说明SRAP技术可用于苔藓植物的遗传多样性研究。
Abstract:
An optimal protocol of SRAPPCR was established by orthogonal method for Hypnum pallescens. Based on it,genetic diversity of 11 bryophyte species was analyzed in the present study. The results showed that the optimal protocol was accomplished in 25μL reaction volumes containing 40ng template DNA,2.5 mmol/L MgCl2,0.3 mmol/L dNTPs,15 pmol/L SRAP primer and 1.5 unit Tag DNA polymerase. Five pairs of primers were selected from thirty ones to generate sixtyfive DNA bands which were clear and repetitive,sixtythree of which were polymorphic. Polymorphic percentage was 96.9%. A dendrogram was established based on Hierarchical cluster analysis by SPSS 11.5,which was almost the same as morphological studies,showing that the SRAP technology could be used to analyze the genetic diversity of bryophytes.

参考文献/References

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备注/Memo

备注/Memo:
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更新日期/Last Update: 2010-05-25